PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g010300.1
Common NameMTR_7g010300, MtrDRAFT_AC148762g29v2, MtrDRAFT_AC166313g11v2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 342aa    MW: 38071.4 Da    PI: 8.2253
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g010300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.81.4e-3485142359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      +++YkeClkNhAa+lGgha+DGCgEfm+s++++ +++++lkCaACgCHRnFHRre+ee
  Medtr7g010300.1  85 TITYKECLKNHAANLGGHALDGCGEFMTSPTATpTDPTSLKCAACGCHRNFHRREPEE 142
                      789*****************************99********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-2886140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1886144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-3087139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.73388139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-29211281IPR009057Homeodomain-like
SuperFamilySSF466894.66E-19212281IPR009057Homeodomain-like
TIGRFAMsTIGR015657.8E-27220277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDITLTPTPT PTPAPTSTTS IAPTILTAST TTLTKSPEQQ HETETPTTKF TTSTTPKISP  60
FSNGVLKRFH HHHHHFNHHN NHQPTITYKE CLKNHAANLG GHALDGCGEF MTSPTATPTD  120
PTSLKCAACG CHRNFHRREP EEPPLTTTHV IEYQPHHRHQ PLPPPPFSHR SPNSSSPPPI  180
SSSYYPSAPH MLLALSAALP ENVAAPNQTM LMNSHSNNSR KRFRTKFTQD QKDKMLKFAE  240
KVGWKMQKKD DEFVHEFCNE IGVDRSVLKV WMHNNKNTLA KRENINTNND INDGVKSFQL  300
PLEDEEHKNN VEIHGLNHNH YQNEGGVVGV TVRANGSSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-222192781675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1487620.0AC148762.2 Medicago truncatula clone mth2-15p5, complete sequence.
GenBankAC1663130.0AC166313.2 Medicago truncatula chromosome 7 clone mte1-4j13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621193.10.0homeobox domain, ZF-HD class protein
SwissprotQ9LXG02e-68ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA2Q1B80.0A2Q1B8_MEDTR; Homeobox domain, ZF-HD class protein
STRINGVIT_14s0108g00750.t013e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-55homeobox protein 34
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]